Newsletter - July 2022
nf-core community newsletter for July 2022
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9 pipeline releases, 4 upcoming events.
 1st July2022 |
New pipeline first releases! 🎉
These pipelines just had their very first release.
| nf-core/circdnav1.0.0v1.0.1 Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells. |
| nf-core/isoseqv1.0.0 Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation. |
| nf-core/rnavarv1.0.0 gatk4 RNA variant calling pipeline |
Pipeline releases
Upcoming events
| TalkBytesize: DSL2 Coding style recommendations (Part 1) | 5 Jul 2022 |
| Maxime Garcia - Barncancerfonden, Stockholm, Sweden | |
| TalkBytesize: nf-core/inkscape and tube map diagrams | 12 Jul 2022 |
| James Fellows Yates - Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | |
| TalkBytesize: Bactopia & using nf-core components in non-nf-core pipelines | 19 Jul 2022 |
| Robert A Petit III - Wyoming Public Health Lab, USA | |
| TalkBytesize: nf-core/chipseq | 26 Jul 2022 |
| Jose Espinosa-Carrasco - Center for Genomic Regulation, Barcelona | |
In case you missed it
New pipelines & proposals
nf-core/isoseqNew repo
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
nf-core/rnadnavarNew repo
Pipeline for RNA and DNA integrated analysis for somatic mutation detection
Pipeline for RNA and DNA integrated analysis for somatic mutation detection
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