Newsletter - February 2023
nf-core community newsletter for February 2023
Want nf-core news in your inbox? Subscribe to the newsletter.
1 advisory, 6 pipeline releases, 8 upcoming events.
 1st February2023 |
Advisories
| lowKnown Regression Trimming parameters ignored in RNA-seq pipeline 3.10 The clip parameters for read trimming remain without affect for that pipeline version |
New pipeline first releases! 🎉
These pipelines just had their very first release.
| nf-core/differentialabundancev1.0.0v1.0.1 Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq |
Pipeline releases
Upcoming events
| TalkBytesize: nf-core/pre-commit | 7 Feb 2023 |
| Matthias Hörtenhuber, Scilifelab Data Centre, Sweden | |
| TalkBytesize: nf-core/crisprseq | 14 Feb 2023 |
| Júlia Mir (QBiC, Tübingen University) and Marta Sanvincente (Pompeu Fabra University, Barcelona) | |
| TalkBytesize: variantcatalogue | 21 Feb 2023 |
| Solenne Correard, University of British Columbia, Vancouver, Canada | |
| TalkBytesize: nf-core/mag | 28 Feb 2023 |
| Sabrina Krakau - University Tübingen, QBiC | |
| TalkBytesize: nf-core modules patch | 7 Mar 2023 |
| Phil Ewels - Seqera Labs | |
| Trainingnf-core Training - March 2023 | 13 Mar 2023 – 16 Mar 2023 |
| A set of global online Nextflow and nf-core training events | |
| TalkBytesize: nf-core/hgtseq | 21 Mar 2023 |
| Francesco Lescai - Department of Biology and Biotechnology, University of Pavia | |
| HackathonHackathon - March 2023 (Online) | 27 Mar 2023 – 29 Mar 2023 |
| A virtual hackathon with local gatherings to develop nf-core together | |
In case you missed it
New pipelines & proposals
nf-core/pathogensurveillanceNew repo
Surveillance of pathogens using population genomics and sequencing
Surveillance of pathogens using population genomics and sequencing
nf-core/viralmetagenomeNew repo
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
This newsletter is brought to you by the nf-core community. |