1 blog post, 11 pipeline releases, 7 upcoming events.

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1st January2025

Blog posts

nf-core/tools - 3.1.0
Everything is going crate
10 Dec 2024 · by mashehu, mirpedrol, ewels
A wall of red, blue and green plastic crates

New pipeline first releases! 🎉

These pipelines just had their very first release.

nf-core/phaseimputev1.0.0
A bioinformatics pipeline to phase and impute genetic data
nf-core/referencesv0.1
nf-core/references is a bioinformatics pipeline that build references, for multiple use cases

Pipeline releases

nf-core/airrflow
v4.2.011 Dec 2024
nf-core/demultiplex
v1.5.410 Dec 2024
nf-core/fastquorum
v1.1.02 Dec 2024
nf-core/mag
v3.3.019 Dec 2024
nf-core/methylseq
v3.0.016 Dec 2024
nf-core/pairgenomealign
v1.1.118 Dec 2024
nf-core/rnaseq
v3.18.020 Dec 2024
nf-core/sarek
v3.5.012 Dec 2024
nf-core/scrnaseq
v3.0.010 Dec 2024

Upcoming events

TalkBytesize: Content Addressable Data Storage14 Jan 2025
Rob Syme, Seqera
Talk#regulatory - monthly meeting21 Jan 2025
Round table in regulatory led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH)
Talk#animal-genomics: January Meeting22 Jan 2025
ELIXIR Domestic Animals Genome & Phenome Focus Group white paper section round table
TalkBytesize: using JSON schema in Nextflow pipelines 28 Jan 2025
Nicolas Vannieuwkerke, Center for Medical Genetics Ghent
TalkBytesize: nf-core/smrnaseq11 Feb 2025
Alex Peltzer, Boehringer Ingelheim
Talk#animal-genomics: February Meeting19 Feb 2025
Harris Lewin (Arizona State University, USA)
TalkBytesize: data science operations (DSO)25 Feb 2025
Gregor Sturm, Boehringer Ingelheim

In case you missed it

New pipelines & proposals

nf-core/abotyperNew repo
A pipeline for characterising the Human Blood Group and Red Cell Antigens using Oxford Nanopore third-generation sequencing data.
nf-core/stableexpressionNew repo
This pipeline is dedicated to identifying the most stable genes within a single or multiple expression dataset(s). This is particularly useful for identifying the most suitable RT-qPCR reference genes for a specific species.

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