3 blog posts, 10 pipeline releases, 6 upcoming events.
 1st April2025 |
Blog posts
nf-core survey 2025: the results
Results summary from the nf-core community survey 2025
26 Mar 2025 · by jfy133, FranBonath
Results summary from the nf-core community survey 2025
26 Mar 2025 · by jfy133, FranBonath
nf-core weekly help desk is coming to Asia-Pacific!
Join the APAC community for a weekly help desk.
10 Mar 2025 · by awgymer, christopher-hakkaart
Join the APAC community for a weekly help desk.
10 Mar 2025 · by awgymer, christopher-hakkaart
New pipeline first releases! 🎉
These pipelines just had their very first release.
| nf-core/genomeassemblerv1.0.0v1.0.1 Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads |
Pipeline releases
Upcoming events
| TalkBytesize: nf-core/variantbenchmarking | 1 Apr 2025 |
| Kübra Narci, German Human Genome-Penome Archieve, DKFZ Heidelberg | |
| TalkBytesize: nf-core/proteinfamilies | 8 Apr 2025 |
| Evangelos Karatzas, EMBL-EBI, Cambridge | |
| Talk#animal-genomics: April Meeting | 16 Apr 2025 |
| Damir Baranasic (MRC, London Institute of Medical Sciences, UK) | |
| TalkBytesize: nf-core/fastqrepair | 13 May 2025 |
| Tommaso Mazza, IRCCS Casa Sollievo della Sofferenza - Mendel | |
| HackathonHackathon - May 2025 (Boston) | 13 May 2025 – 14 May 2025 |
| An in-person hackathon held in Boston | |
| Talk#animal-genomics: May Meeting | 21 May 2025 |
| James Reecy (Iowa State University, USA) | |
In case you missed it
| Maintainers Minutes: February 2025 28 Feb 2025 |  |
| Integrating ontologies into nf-core modules 24 Feb 2025 |  |
| Maintainers Minutes: January 2025 31 Jan 2025 | |
New pipelines & proposals
Proposals from nf-core/proposals.
nf-core/rarevariantburdenNew repo
Pipeline for performing consistent summary count based rare variant burden test, which is useful when we only have sequenced cases data. For example, we can compare the cases against public summary count data, such as gnomAD.
Pipeline for performing consistent summary count based rare variant burden test, which is useful when we only have sequenced cases data. For example, we can compare the cases against public summary count data, such as gnomAD.
nf-core/variantprioritizationNew repo
Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for precision cancer medicine using Personal Cancer Genome Reporter (PCGR). The pipeline offers germline SNVs/INDELS intepretation and annotation using Cancer Predisposition Sequencing Reporter (CPSR).
Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for precision cancer medicine using Personal Cancer Genome Reporter (PCGR). The pipeline offers germline SNVs/INDELS intepretation and annotation using Cancer Predisposition Sequencing Reporter (CPSR).
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