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2 blog posts, 12 pipeline releases, 2 upcoming events.

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1st July2025

Blog posts

nf-core/tools - 3.3
An nf-testic release
3 Jun 2025 · by mashehu, mirpedrol
3D rendering of a cute little space rocket painted red and white with a fluffy smoke cloud coming out of it.
Maintainers Minutes: May 2025
Keeping you informed of the latest maintainers discussions
3 Jun 2025 · by maxulysse
Cartoon yellow rubber duck with nf-core logo badge on its body with the nf-core logo.

New pipeline first releases! 🎉

These pipelines just had their very first release.

nf-core/createtaxdbv1.0.0
Parallelised and automated construction of metagenomic classifier databases of different tools
nf-core/pathogensurveillancev1.0.0
Surveillance of pathogens using population genomics and sequencing

Pipeline releases

nf-core/airrflow
v4.3.19 Jun 2025
nf-core/bamtofastq
v2.2.017 Jun 2025
nf-core/demo
v1.0.227 Jun 2025
nf-core/metatdenovo
v1.2.018 Jun 2025
nf-core/oncoanalyser
v2.1.030 Jun 2025
nf-core/pixelator
v2.0.024 Jun 2025
nf-core/proteinfamilies
v1.2.016 Jun 2025
nf-core/raredisease
v2.6.025 Jun 2025
nf-core/rnaseq
v3.19.010 Jun 2025
nf-core/scnanoseq
v1.2.09 Jun 2025

Upcoming events

TalkBytesize: nf-core test-datasets8 Jul 2025
Julian Flesch, QBiC, University Tübingen
Talk#animal-genomics: July Meeting16 Jul 2025
Luca Fontanesi (Full Professor of animal breeding and genetics at the University of Bologna)

In case you missed it

New pipelines & proposals

Proposals from nf-core/proposals.

nf-core/panoramaseqNew repo
a pipeline to process sequencing based spatial transccriptomics data from in-situ arrays
nf-core/locusassemblyAccepted
Pipeline proposal #52
nf-core/tcrpmhcbindingAccepted
Pipeline proposal #50
nf-core/metabiomxNew
Pipeline proposal #58
nf-core/consepopgenNew
Pipeline proposal #57
nf-core/SNP_clusteringNew
Pipeline proposal #56
nf-core/netzooNew
Pipeline proposal #55
New RFC: using referencesNew
RFC proposal #48

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