1 blog post, 1 advisory, 8 pipeline releases, 6 upcoming events.

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1st October2025

Blog posts

Running nf-core pipelines on Google Colab
A guide to running and interacting with nf-core pipelines using Colab and VS Code
2 Sept 2025 · by KurayiChawatama
Epic Handshake between nf-core and colab

Advisories

highKnown Regression
Final family representative sequences are faulty in proteinfamilies pipeline 1.3.0
Bug inside the extract_family_reps.py script of v1.3.0

Pipeline releases

nf-core/mag
v5.0.030 Sept 2025
nf-core/oncoanalyser
v2.2.02 Sept 2025
nf-core/pixelator
v2.1.017 Sept 2025
nf-core/proteinfamilies
v1.3.123 Sept 2025
nf-core/rnafusion
v4.0.019 Sept 2025
nf-core/rnaseq
v3.21.018 Sept 2025
nf-core/rnavar
v1.2.123 Sept 2025
nf-core/scnanoseq
v1.2.12 Sept 2025

Upcoming events

Talk#animal-genomics: October Meeting15 Oct 2025
Daniela Lourenco (University of Georgia, USA)
HackathonHackathon - October 2025 (Barcelona)28 Oct 2025 – 29 Oct 2025
An in-person hackathon held in Barcelona
TalkBytesize: nf-core/mag v5.028 Oct 2025
Diego Alvarez Saravia, University of Magallanes
TalkBytesize: The Nextflow plugin registry11 Nov 2025
Phil Ewels, Seqera
Talk#animal-genomics: Meeting19 Nov 2025
Ekaterina Osipova (Harvard University)
TalkBytesize: nf-core pipeline template walk through V225 Nov 2025
Júlia Mir Pedrol, CRG

In case you missed it

Bytesize: RFCs
16 Sept 2025Talk

New pipelines & proposals

Proposals from nf-core/proposals.

nf-core/pacsomaticNew repo
Nextflow pipeline for PacBio HiFi tumor/normal somatic genomics
nf-core/seqsubmitAccepted
Pipeline proposal #79
nf-core/nf-segmentedAccepted
Pipeline proposal #74
nf-core/thetisAccepted
Pipeline proposal #66
nf-core/longrarediseaseAccepted
Pipeline proposal #64
nf-core/consepopgenAccepted
Pipeline proposal #57
nf-core/hpc-dock-benchNew
Pipeline proposal #84
nf-core/cageflowNew
Pipeline proposal #83
nf-core/provacseqNew
Pipeline proposal #82
nf-core/proteindesignNew
Pipeline proposal #81
nf-core/genomicvistaNew
Pipeline proposal #80
nf-core/mspepidNew
Pipeline proposal #78
Test RFC: Python Approval SystemAccepted
Other proposal #87

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