2 blog posts, 11 pipeline releases, 6 upcoming events.

View in browser

nf-core newsletter logo

1st November2025

Blog posts

nf-core core team retreat - September 2025
Updates from the nf-core core team retreat.
20 Oct 2025 · by christopher-hakkaart
nf-core core team group photo taken during the 2025 retreat in Stockholm, Sweden.
nf-core/tools - 3.4.0
Container regex-it
16 Oct 2025 · by mashehu, mirpedrol
Photo of a man staring at a high stack of shipping containers.

Pipeline releases

nf-core/ampliseq
v2.15.06 Oct 2025
nf-core/bacass
v2.5.017 Oct 2025
nf-core/demultiplex
v1.7.028 Oct 2025
nf-core/funcscan
v3.0.04 Oct 2025
nf-core/mag
v5.1.027 Oct 2025
nf-core/molkart
v1.2.027 Oct 2025
nf-core/proteinfamilies
v2.0.017 Oct 2025
nf-core/reportho
v1.1.021 Oct 2025
nf-core/sarek
v3.6.0v3.6.124 Oct 2025
nf-core/scrnaseq
v4.1.030 Oct 2025
nf-core/viralrecon
v3.0.028 Oct 2025

Upcoming events

TalkBytesize: The Nextflow plugin registry11 Nov 2025
Phil Ewels, Seqera
Talk#animal-genomics: Meeting19 Nov 2025
Ekaterina Osipova (Harvard University)
TalkBytesize: nf-core pipeline template walk through V225 Nov 2025
Júlia Mir Pedrol, CRG
TalkBytesize: topic channels in nf-core/modules2 Dec 2025
Nicolas Vannieuwkerke, Center for Medical Genetics Ghent
TrainingIntroduction to nf-core/airrflow4 Dec 2025
Introductory practical workshop to nf-core/airrflow
TalkBytesize: nf-core/reportho9 Dec 2025
Igor Trujnara, Institute for Research in Biomedicine / Barcelona Supercomputing Center, Barcelona

In case you missed it

#animal-genomics: October Meeting
15 Oct 2025Talk
Hackathon - October 2025 (Barcelona)
28 Oct 2025 – 29 Oct 2025Hackathon
Bytesize: nf-core/mag v5.0
28 Oct 2025Talk
Running nf-core pipelines on Google Colab
2 Sept 2025		Epic Handshake between nf-core and colab
Maintainers Minutes: August 2025
31 Aug 2025		Cartoon yellow rubber duck with nf-core logo badge on its body with the nf-core logo.
Why are my pipeline download tests failing?
28 Aug 2025		Short range photograph of a truck transporting large green pipes.
Introducing nf-core Advisories
21 Aug 2025		A cartoon penguin standing on snow looks startled as it approaches a wooden signpost with three directional signs. The top sign, pointing right and colored light blue, reads 'Known Regression' with a bug icon. The middle sign, pointing left and colored dark blue, reads 'Data Corruption' with a database icon. The bottom sign, pointing right and colored yellow, reads 'Incompatibility' with a warning triangle. The background shows an icy, snowy landscape under a blue sky with soft clouds.
Empowering bioinformatics communities with Nextflow and nf-core
6 Aug 2025		Laboratory glassware — beakers, a conical flask and a pipette on a lab bench
highFinal family representative sequences are faulty in proteinfamilies pipeline 1.3.0
29 Sept 2025

New pipelines & proposals

Proposals from nf-core/proposals.

nf-core/seqsubmitNew repo
nf-core pipeline for data submission to ENA
nf-core/gwasgeneassociationtestingAccepted
Pipeline proposal #90
nf-core/provacseqAccepted
Pipeline proposal #82
nf-core/proteindesignAccepted
Pipeline proposal #81
nf-core/mspepidAccepted
Pipeline proposal #78
nf-core/scalpelNew
Pipeline proposal #96
nf-core/tandemrepeatNew
Pipeline proposal #94
nf-core/cosimflowNew
Pipeline proposal #93
nf-core/swgsrelateNew
Pipeline proposal #92
New special interest group: ontologiesNew
Other proposal #95
New RFC: nf-core should have a policy about use of LLMs/AINew
RFC proposal #91

This newsletter is brought to you by the nf-core community. Unsubscribe here .

Join us ·Blog ·Events ·GitHub